DRSC/TRiP Functional Genomics Resources

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Protein Alignment si:dkey-51a16.9 and Rnf122

DIOPT Version :9

Sequence 1:XP_001344370.3 Gene:si:dkey-51a16.9 / 100005267 ZFINID:ZDB-GENE-030616-560 Length:132 Species:Danio rerio
Sequence 2:XP_038951021.1 Gene:Rnf122 / 502091 RGDID:1561238 Length:183 Species:Rattus norvegicus


Alignment Length:105 Identity:74/105 - (70%)
Similarity:88/105 - (83%) Gaps:1/105 - (0%)


- Green bases have known domain annotations that are detailed below.


Zfish     9 LPLNVYLIILGIGLFIFMLSMIFCCY-LFRLRRQGTQEQYGYNEVVLKGPGKKLSLLGQTCAVCL 72
            ||||:|::|.|.|:|:||||:||||| :.:||.|...|:|||.||||||..|||.|.||||||||
  Rat    61 LPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCL 125

Zfish    73 EEFRSRDELGVCPCSHAFHKKCLVKWLEIRSVCPMCNKPI 112
            |:|:.:|||||.||.||||:||||||||:|.|||||||||
  Rat   126 EDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPI 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
si:dkey-51a16.9XP_001344370.3 zf-RING_2 67..108 CDD:290367 31/40 (78%)
Rnf122XP_038951021.1 RING-H2_RNF24_like 119..165 CDD:319383 36/45 (80%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG44968
OrthoDB 1 1.010 - - D1625209at2759
OrthoFinder 1 1.000 - - FOG0001067
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22763
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.030

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