DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smyhc3 and zip

DIOPT Version :10

Sequence 1:NP_001129995.1 Gene:smyhc3 / 100001337 ZFINID:ZDB-GENE-080930-1 Length:1938 Species:Danio rerio
Sequence 2:NP_523860.2 Gene:zip / 38001 FlyBaseID:FBgn0287873 Length:2056 Species:Drosophila melanogaster


Alignment Length:1978 Identity:762/1978 - (38%)
Similarity:1189/1978 - (60%) Gaps:78/1978 - (3%)


- Green bases have known domain annotations that are detailed below.


Zfish    14 PYLRKSDRERLE----AQTRPFDMKKECFVPDADEEYLKATVISRDGDKATCETSK-GTTVTVKE 73
            |.|:....||.:    |....:..|:..:||..::.::.|::....||:...|.:: |..|.:..
  Fly    55 PELKYLSVERNQFNDPATQAEWTQKRLVWVPHENQGFVAASIKREHGDEVEVELAETGKRVMILR 119

Zfish    74 CDVHPQNPPKFDKIEDMAMFTFLHEPAVLFNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNQEV 138
            .|:...|||||||:||||..|.|:|.:||.|:|:||.:.:||||||||||.|||||.||:|.:::
  Fly   120 DDIQKMNPPKFDKVEDMAELTCLNEASVLHNIKDRYYSGLIYTYSGLFCVVVNPYKKLPIYTEKI 184

Zfish   139 VVAYRGKKRSEAPPHIFSISDNAYQYMLSDRENQSILITGESGAGKTVNTKRVIQYFASIAASPT 203
            :..|:|.||.|.|||:|:|:|:||:.||.|||:||||.|||||||||.|||:|||:.|.:|||..
  Fly   185 MERYKGIKRHEVPPHVFAITDSAYRNMLGDREDQSILCTGESGAGKTENTKKVIQFLAYVAASKP 249

Zfish   204 K-------------------------------KETTE--------------KKGTLEDQIIQCNP 223
            |                               .:|.|              ::|.||.|::|.||
  Fly   250 KGSGAVPHPAVLINFSVNTNKYIKVKIMAQNQNQTIEVVNGLKMVEVNSNCQEGELEQQLLQANP 314

Zfish   224 ALEAFGNAKTIRNDNSSRFGKFIRIHFAASGKLASADIETYLLEKSRVTFQLKAERDYHIFYQIL 288
            .|||||||||::|||||||||||||:|.|||.::.|:||||||||||...|.|.||.:|||||:|
  Fly   315 ILEAFGNAKTVKNDNSSRFGKFIRINFDASGFISGANIETYLLEKSRAIRQAKDERTFHIFYQLL 379

Zfish   289 SQKKPELLEMLLITANPYDYAFISQGETQVASINDADELMATDEAFDVLGFTQEEKNSIYKLTGA 353
            :...||..|..::. :...|||:|.|...|..::|..|..||.::.:::|.|.|:.|||:::..|
  Fly   380 AGATPEQREKFILD-DVKSYAFLSNGSLPVPGVDDYAEFQATVKSMNIMGMTSEDFNSIFRIVSA 443

Zfish   354 IMHYGNMKFKQKQREEQAEADGTEDADKSAYLMGLNSADLIKALCHPRVKVGNEWVTKGQNVQQV 418
            ::.:|:|||:|::..:||.......|.|.|:|:||:..|:.:|...||:|||.::|||.|..:||
  Fly   444 VLLFGSMKFRQERNNDQATLPDNTVAQKIAHLLGLSVTDMTRAFLTPRIKVGRDFVTKAQTKEQV 508

Zfish   419 YYAIGALSKSVYEKMFLWMVVRINQSLD-TKQPRQYFIGVLDIAGFEIFDFNTFEQLCINFTNEK 482
            .:|:.|::|:.||:||.|:|.|||:||| ||:....|||:||:||||||:.|:|||||||:||||
  Fly   509 EFAVEAIAKACYERMFKWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEK 573

Zfish   483 LQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEKPMGIMSILEEECMFPKASDATFK 547
            |||.|||.||:||||||::|||||.|||||:|||..||||:||.|||::|:|||.||||:|.||.
  Fly   574 LQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPGGIMALLDEECWFPKATDKTFV 638

Zfish   548 AKLYDNHLGKSNNFQKPRIVKG--KPEAHFSLVHYAGTVDYNINNWLVKNKDPLNETVVGLYQKS 610
            .||...|      ...|:.:|.  :..|.|::|||||.|||:...||:||.|||||.:|.|.|.|
  Fly   639 DKLVSAH------SMHPKFMKTDFRGVADFAIVHYAGRVDYSAAKWLMKNMDPLNENIVSLLQGS 697

Zfish   611 TMKMLSILF--ANYAG-AESAAEGG--GGKTKEKKKKGSSFQTVSALHRENLNKLMTNLRSTHPH 670
            ....:..::  |...| |:.|....  |.:|    :|| .|:|||.|::|.|.|||..||:|:|:
  Fly   698 QDPFVVNIWKDAEIVGMAQQALTDTQFGART----RKG-MFRTVSHLYKEQLAKLMDTLRNTNPN 757

Zfish   671 FVRCIIPNETKTPGAMENPLVMHQLRCNGVLEGIRICRKGFPNRILYGDFKQRYRILNPAAIPDG 735
            ||||||||..|..|.::.|||:.|||||||||||||||:||||||.:.:|:|||.:|.|..||.|
  Fly   758 FVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQEFRQRYELLTPNVIPKG 822

Zfish   736 QFIDSRKGAEKLLGSLDIDHNQYKFGHTKVFFKAGLLGTLEEMRDDRLALIITNIQARARGLLSR 800
             |:|.:|..||::.:|::|.|.|:.|.:|:||:||:|..|||.||.:::.:|.|.||..||.|:|
  Fly   823 -FMDGKKACEKMIQALELDSNLYRVGQSKIFFRAGVLAHLEEERDFKISDLIVNFQAFCRGFLAR 886

Zfish   801 VEFQKIVDRRDALLVIQWNVRAFMGVKNWPWMKLYFKIKPLLRSAEAEKEMANMKEEFLKLKEAY 865
            ..:||.:.:.:|:.:||.|..|::.::||.|.:||.|:||||...:.|:::...::|..:::|..
  Fly   887 RNYQKRLQQLNAIRIIQRNCAAYLKLRNWQWWRLYTKVKPLLEVTKQEEKLVQKEDELKQVREKL 951

Zfish   866 AKSEARRKELEEKMVSLLQEKNDLQLAVQTEQDNLCDAEERCEGLIKNKIQLEAKAKELTERLED 930
            .......:|.|.|....|.||..|...:|.|.:...:|||....|:..|.:||...:||..|:|:
  Fly   952 DTLAKNTQEYERKYQQALVEKTTLAEQLQAEIELCAEAEESRSRLMARKQELEDMMQELETRIEE 1016

Zfish   931 EEEMNAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAALDEIIAKLT 995
            |||....|..:|:|||....:|::.:::.|....|::.||...:.|:|...|::|..|:...||.
  Fly  1017 EEERVLALGGEKKKLELNIQDLEEQLEEEEAARQKLQLEKVQLDAKIKKYEEDLALTDDQNQKLL 1081

Zfish   996 KEKKALQEAHQQTLDDLQSEEDKVNTLTKAKAKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGD 1060
            ||||.|:|........|..||:|...|.|.|||.|..:.:||..|.::::.|.:.:|:|||:|.:
  Fly  1082 KEKKLLEERANDLSQTLAEEEEKAKHLAKLKAKHEATISELEERLHKDQQQRQESDRSKRKIETE 1146

Zfish  1061 LKLTQESVMDLENDKQQLEERLKKKDFEISQLSSRIEDEQAMAAQLQKKLKELQARIEELEEELE 1125
            :...:|.:.:......:::.:|.|::.|::|...||::|.|..|..||..:||::::.|::|:||
  Fly  1147 VADLKEQLNERRVQVDEMQAQLAKREEELTQTLLRIDEESATKATAQKAQRELESQLAEIQEDLE 1211

Zfish  1126 AERAARAKVEKQRADLSRELEEISERLEEAGGATAAQIEMNKKREAEFQKLRRDLEEATLQHEAT 1190
            ||:|||||.||.|.|||.|||.:...|.::...||||.|:..|||.|...|::.|||.|:.||..
  Fly  1212 AEKAARAKAEKVRRDLSEELEALKNELLDSLDTTAAQQELRSKREQELATLKKSLEEETVNHEGV 1276

Zfish  1191 ASTLRKKHADSVSDLGEQIDNLQRVKQKLEKEKSELRLELDDVVSNMEQIAKAKANLEKMCRTLE 1255
            .:.:|.||:..::.:.:|::||::.|..|||.|..|..|..|:.:.:..:..::...::..:..|
  Fly  1277 LADMRHKHSQELNSINDQLENLRKAKTVLEKAKGTLEAENADLATELRSVNSSRQENDRRRKQAE 1341

Zfish  1256 DQMSEYRTKYEEGQRSINDFTMKKAKLQTENGELSRQLEEKDSLVSQLTRGKQSYTQQIEDLKRQ 1320
            .|::|.:.|..|.:|:.::...|..|||.|...::.||||.:...|...:...:...|:.:.::.
  Fly  1342 SQIAELQVKLAEIERARSELQEKCTKLQQEAENITNQLEEAELKASAAVKSASNMESQLTEAQQL 1406

Zfish  1321 LEEEVKAKNALAHAVQSARHDAELLREQYEEEQEAKAELQRSLSKANSEVAQWRTKYETDAIQRT 1385
            ||||.:.|..|:..::....:.|.|:||.||:.|||...:|.|::..:::.:.:.|.|.|| ...
  Fly  1407 LEEETRQKLGLSSKLRQIESEKEALQEQLEEDDEAKRNYERKLAEVTTQMQEIKKKAEEDA-DLA 1470

Zfish  1386 EELEDAKKKLAQRLQDAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVDVERSNAAAAALDKKQRN 1450
            :|||:.||:|.:.::..|..|:.:.|:...|:|:|.::|:|:||..:::|........|:|||:|
  Fly  1471 KELEEGKKRLNKDIEALERQVKELIAQNDRLDKSKKKIQSELEDATIELEAQRTKVLELEKKQKN 1535

Zfish  1451 FDKVLAEWKQKYEESQSELESSQKEARSLSTELFKLKNSYEESLDHLESMKRENKNLQEEIADLT 1515
            |||:|||.|...|:...|.:::::|||...|::..:....:|:.|.:|.::.:.|.||.|:.||.
  Fly  1536 FDKILAEEKAISEQIAQERDTAEREAREKETKVLSVSRELDEAFDKIEDLENKRKTLQNELDDLA 1600

Zfish  1516 EQIGESGKNIHELEKMRKQLEQEKAEIQTALEEAEGSLEHEEGKILRAQLEFNQVKADIERKLSE 1580
            ...|.:.||:|||||.::.||.:.||::...||.|..|:..|...||.::....:::..||.|..
  Fly  1601 NTQGTADKNVHELEKAKRALESQLAELKAQNEELEDDLQLTEDAKLRLEVNMQALRSQFERDLLA 1665

Zfish  1581 KDEEMEQAKRNQQRMIDTLQSSLESETRSRNEALRLKKKMEGDLNEMEIQLSQANRQASEAQKQL 1645
            |:|..|:.:|...:.:..|::.|:.|.:.|..|:..|||:||||.|:|..:...|:...:|.|..
  Fly  1666 KEEGAEEKRRGLVKQLRDLETELDEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHA 1730

Zfish  1646 KSLHGHLKDAQLQLDDALRGNDDLKENIAIVERRNNLLQAELDELRSLVEQTERGRKLAEQELMD 1710
            |.|...:|||....::|....::|:......||:...|:||:.:|...:..:||.|:.||.|..:
  Fly  1731 KKLQAQVKDALRDAEEAKAAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDE 1795

Zfish  1711 VSERVQLLHSQNTSLLNQKKKLEGDNTQLQTEVEEAVQECRNAE---EKAKKAITDAAMMAEELK 1772
            ::|.:....::.:.::::|::||.....|:.|:||   |..|:|   ::::||......:..||.
  Fly  1796 LAEEIANNANKGSLMIDEKRRLEARIATLEEELEE---EQSNSEVLLDRSRKAQLQIEQLTTELA 1857

Zfish  1773 KEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAMKGGKKQVQKLEARVRELESEVEMEQRKASD 1837
            .|:..|...|..:..:|:..|:|:.:|.|.|.......|..:..|||::..||.::|.|.::...
  Fly  1858 NEKSNSQKNENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLL 1922

Zfish  1838 SVKGVRKYERRIKELTYQTEEDRKNLARLQDLVDKLQLKVKSYKRTAEEAEEQANSNLGKFRKLQ 1902
            ..|..||.:::|||||...|::|:::.:.::.:|||..::|..||..:|.||:......:.||.|
  Fly  1923 QQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRKYQ 1987

Zfish  1903 HELDEAEERADIAESQVNKLRAKSRDTG 1930
            .|.::..|..:....::|.|:.|.|.||
  Fly  1988 RECEDMIESQEAMNREINSLKTKLRRTG 2015

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smyhc3NP_001129995.1 Myosin_N 32..76 CDD:460670 9/44 (20%)
MYSc_class_II 99..768 CDD:276951 360/721 (50%)
Myosin_tail_1 848..1925 CDD:460256 335/1079 (31%)
zipNP_523860.2 Myosin_N 79..122 CDD:460670 9/42 (21%)
MYSc_Myh2_insects_mollusks 145..854 CDD:276876 360/721 (50%)
Myosin_tail_1 931..2011 CDD:460256 335/1083 (31%)

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