DRSC/TRiP Functional Genomics Resources

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Protein Alignment si:dkey-33c12.12 and lim-8

DIOPT Version :9

Sequence 1:NP_001082916.2 Gene:si:dkey-33c12.12 / 100000024 ZFINID:ZDB-GENE-081028-30 Length:214 Species:Danio rerio
Sequence 2:NP_741201.1 Gene:lim-8 / 175952 WormBaseID:WBGene00017904 Length:1099 Species:Caenorhabditis elegans


Alignment Length:76 Identity:25/76 - (32%)
Similarity:44/76 - (57%) Gaps:10/76 - (13%)


- Green bases have known domain annotations that are detailed below.


Zfish   133 VLIHRVIVGSPANRAGMKPGDVIIEINGVKVNTSEE------IYNAVRTSESLNVVVRRG---AD 188
            |::..|||||||::||:..||.|:.|||.:::...:      ::.|.|..|: :|::.|.   |.
 Worm   444 VIVESVIVGSPADKAGLLVGDTILSINGEEMSDKYQSGVTRILHEAARVGEA-DVLILRAPVPAP 507

Zfish   189 LLMLHMTPEST 199
            :|...|:..|:
 Worm   508 MLSKQMSTSSS 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
si:dkey-33c12.12NP_001082916.2 Trypsin_2 <1..61 CDD:290102
PDZ_serine_protease 102..186 CDD:238487 20/58 (34%)
lim-8NP_741201.1 PDZ 431..489 CDD:238080 16/44 (36%)
LIM 1030..1088 CDD:214528
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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